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Remember also that your hard drive is the slowest part of your system, and will stiffle some of the gains when working with large files. Going to RAID0 may give a bigger boost than SSE4.
Have you run the WinRAR benchmark on both chips to see the differences between the 2 chips?
Q9450 @ 4ghz + ASUS P5Q Deluxe on H2O
2x36gb Raptors RAID 0, 4gb OCZ PC2-8000
x64 XP Pro, x64 Vista and x64 Ubuntus SMP goodness
Q6600 @ 3.8ghz + Abit IP35 Pro on H2O
XFX 8800GS Alpha Dog, 4gb OCZ PC2-8000
x64 XP & x64 Ubuntus SMP goodness
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