Ian, just to add a few comments:
You've done a marvelous job with this build. You obviously spent hours doing the design, and then made sure it was well-executed. The case is stunning - a big improvement on it's rather mundane/office-appropriate look before (that's not a dig on the case - I like that look for some applications). You won the modding competition; you won the new CPU; you've received many well-deserved kudos, and you've progressed your reputation which will no doubt lead to more sponsored builds. That would be enough for most people. BUT, hats off to you for wanting to make it perfect.
I just reviewed the MDPC website for a quick check. I didn't look at all the systems, but you'll notice that not all have photos of the back of the motherboard area (not saying they aren't well done, just maybe there were no pics or they weren't exciting enough to show). But, when you do see one with this part showing - it's hard not to go "WOW." I can't speak for Nils and his secret committee, but I'd guess this absolutely perfect/no compromise trend in ALL areas of the case is one we'll continue to see evolve. In fact, I don't recall seeing the back of the motherboard on PermaFrost either, so not sure if it received the same attention to detail as the rest of the system. What made PermaFrost standout was the white interior, the colors, the way you laid out the interior, and the wonderful photography. Now that others have showcased the back of the case, that pushes the bar for everyone else - just as you have raised it when it comes to case design, and now innovative 24-pin wire management.
Soooo ... I guess it really is up to you as to where you want to go with the build. I don't think MDPC should necessarily be everyone's goal (I'm guessing it is one of yours). Fit for purpose is up to the individual. But, in one of your earlier comments, you said it would be over $12K if you were building this for a client. What do you think the client would expect for that amount of money?

Most importantly, it's what satisfies you, not any of us.
You've told us you had time pressures with the last of the build. Hopefully you have some time now to work on it some more, if you so choose. Of course, it's not as much fun redoing things as it is designing and creating something new. Good Luck, and I hope you're having fun in the process!
(apologies for going a bit philosophical here; some of the responses to your question just got me pondering . . .)
To answer your specific question on how it looks now -- much better in the after pic. I see you changed out the white molex and 8-pin connector - that helps a lot. The thing that grabs my eye now are the unsleeved portions of the fan wires.
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