You did all modifications with bar/wpcredit on a running system without a reboot i assume.
Hmm changing the nb multi requires a warm start says the bkdg. Can be the clock generator might need some sort of refresh command to display correct values if the multi is changed on a runnin system.
Polygon's bios-mod modifies MSR registers via the lan-boot module. This one should be loaded after the prozessor and stuff got initialized so the nb-multi change only confuses the clockgenerator.
If the nb multi is locked upward on the cpu the symptom is more obvious as the ref HT changes, with no nb-multi lock things look different.




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