I think the GTS is worth the extra cost. You can't increase the vGPU in the BIOS, but it comes higher out-of-the-box. It also has an extra phase for the voltage, and of course the extra SP's and better cooling. So far the RAM on the GTS is clocking much better for me as well, and it also has tighter timings than the GT model I had stock.
W/o doing any hardmods I had these results:
8800GT-512 741/1728/951 (1.1v BIOS mod & 1.4ns timings) 14,879-3DMark06
8800GTS-512 771/1944/1062 (stock) 16,190-3DMark06
My GT also had RAM issues, and I ended up having to RMA it. I had to reduce RAM clocks to 885 to pass 8 loops of Battle of Proxycon (3DMark03).
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