If you open the linked document you should have a look at point 2.1.4. It clearly states that the fan (pump in this case) must pull up the signal internally to a maximum of 5.25V, but this is exactly what the pump does not do - it has no pull up circuit. Point 2.3.1 shows how a hardware monitoring device like the aquaero has to be designed and it is exactly what we do incl. better tolerances to prevent damages due to faulty fans for example.
Well, we could have added a pull up on our side but in this case I do not want to be the person who has to reply to all the emails from customers claiming our aquaero damaged their fans because exactly that could happen then. If you go back to point 2.1.4 it states at the end that new designs should use 3.3V which means there are two different standards. Swiftechs pump requires 5V while a fan might only work with 3.3V. If we would add the pull up to 5V on our side the pump will work but the fan will be damaged...
Long story short: nothing wrong on our side. Anyway, there is a simple workaround for those who want to get it working without investing much money. You will need a 4,7kOhm resistor (a bit more would also work) some wiring and a soldering iron. Your goal will be to add 5V to the PWM signal wire of the pump. If your pump is powered directly by the PSU, then please take the 5V from the same cable where the pump is connected. If your pump is powered by the aquaero, then please take the 5V from the cable where the aquaero is connected. Remember to place the resistor into this connection.
With this little modification the pump can be controlled through the aquaero but this brings us to another problem. Normally the pump should always run at a minimum speed but due to the strange PWM implementation it will stop if you use a too low speed setting. I highly recommend that you go into the fan settings of the aquaero and set a minimum value of at least 30% for the channel where the pump is connected. Also make sure that you enable the option to hold the minimum setting so the pump will always run even when you do something wrong with the controller setup.
And last but not least: we are aware of the problem when you connect a bunch of fans like the ones from Corsair. It has been already solved with a small hardware modification and will be included into the next revision of the main controller. Devices dispatched in April 2014 should already use the newer revision.
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