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The CrossFire Sideport is simply another high bandwidth link between the GPUs. Data can be sent between them via a PCIe switch on the board, or via the Sideport. The two aren't mutually exclusive, using the Sideport doubles the amount of GPU-to-GPU bandwidth on a single Radeon HD 4870 X2. So why disable it?
According to AMD the performance impact is negligible, while average frame rates don't see a gain every now and then you'll see a boost in minimum frame rates. There's also an issue where power consumption could go up enough that you'd run out of power on the two PCIe power connectors on the board. Board manufacturers also have to lay out the additional lanes on the graphics card connecting the two GPUs, which does increase board costs (although ever so slightly).
AMD decided that since there's relatively no performance increase yet there's an increase in power consumption and board costs that it would make more sense to leave the feature disabled.
The reference 4870 X2 design includes hardware support for the CrossFire Sideport, assuming AMD would ever want to enable it via a software update. However, there's no hardware requirement that the GPU-to-GPU connection is included on partner designs. My concern is that in an effort to reduce costs we'll see some X2s ship without the Sideport traces laid out on the PCB, and then if AMD happens to enable the feature in its drivers later on some X2 users will be left in the dark.
I pushed AMD for a firm commitment on how it was going to handle future support for Sideport and honestly, right now, it's looking like the feature will never get enabled. AMD should have never mentioned that it ever existed, especially if there was a good chance that it wouldn't be enabled. AMD (or more specifically ATI) does have a history of making a big deal of GPU features that never get used (Truform anyone?), so it's not too unexpected but still annoying.
Looks like it might be a long wait!!