@Phatboy69: we had a similar problem with another customer. Below a specific voltage some fans do not generate a clean rpm signal anymore which leads to weird rpm values. The way the PA2 and AE5 reads out the rpm is different so it is also normal that for example the AE5 will provide a normal value while the value from PA2 is messed up. The AE5 will get even better on this with the next firmware because we added another filter for muddy rpm signals.
Here is an example for a fan that we analyzed with an oscilloscope:
http://www.abload.de/img/nbpk1_abge4.png
Looks like a clean signal at first but it is not. If you take a closer look at the end of the wave from the center you can see a another small wave behind. When we zoom into this area you will get this:
http://www.abload.de/img/nbpk1_buecm.png
This little second wave is causing all the trouble because it generates another impulse for the rpm value. That is the reason why you get such a huge rpm value.
So, nothing wrong with both devices. It is just the fan which is not able to generate a clean rpm signal if the voltage is too low.