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JBELL
10-21-2002, 12:14 AM
raise your hand if your getting these HUGE mothers and what is the point value of them?
JBELL
10-21-2002, 12:18 AM
project number:
903

server:
171.64.122.111

Name:
PTrpCage

# of atoms:
8548

days:
8.00

points:
6.20
JBELL
10-21-2002, 12:18 AM
Project 900 to 903 are the first production Gromacs WUs. We are checking the stability of small proteins which we have simulated before. If this looks good, on to bigger and more interesting projects. Gromacs is especially important to us since it will allow us to simulate explicit solvation models (much more accurate models) as fast or faster than the simpler models we've used in the past. We are interested in seeing how these more accurate models will make an impact, especially for the Alzheimer peptide work which appears to need the greater accuracy. Project 903 looks at the TrpCage protein, something which is of great interest to the scientific community currently.
ExtremeAMD
10-21-2002, 01:04 AM
Well it's taking my client FOREVER to cruch this one... I bet I got one of those.
Hardass
10-21-2002, 03:04 AM
Originally posted by JBELL
Project 900 to 903 are the first production Gromacs WUs. We are checking the stability of small proteins which we have simulated before. If this looks good, on to bigger and more interesting projects. Gromacs is especially important to us since it will allow us to simulate explicit solvation models (much more accurate models) as fast or faster than the simpler models we've used in the past. We are interested in seeing how these more accurate models will make an impact, especially for the Alzheimer peptide work which appears to need the greater accuracy. Project 903 looks at the TrpCage protein, something which is of great interest to the scientific community currently.
These are the new Gromacs that the P4,s fold faster than amd rigs, they are worth 6 points. now you know why I,m switching over to the Darkside!:D
Hardass
10-21-2002, 03:06 AM
Originally posted by ExtremeAMD
Well it's taking my client FOREVER to cruch this one... I bet I got one of those.
You are folding a 180 series protein at 2gig it is taking on average 7 to 9 mins per frame. This one is worth 5 points.
majormav
10-22-2002, 07:15 PM
doing one of em now on p4 rig taking an average of 5min 30 per 1% looking good these ones .... thanks to hardass for the help in setting up and ddtung for initial thread about em .... p4 is at 3476mhz and running sweet will check mbm log tomorrow and if all is well take her higher and higher .... need to really run this chip in for the odd 3d mark session
Smizack
10-22-2002, 07:59 PM
I had one or two. They freakin take forever!:mad:
Hardass
10-22-2002, 08:00 PM
They will on a amd rig.:eek:
JCviggen
10-23-2002, 03:45 AM
http://users.pandora.be/JCviggen/fold.JPG

takes about 5 min 15-25 sec per frame on my 3.66 P4.
Mind you sometimes I'm surfing on it which slows it down a bit.
definately go pretty good on a P4...
DDTUNG
10-23-2002, 03:58 AM
JC is the man who helped me set up my first gromac. Now I have 6 P4s and 3 P3s running them 24/7.:D

Thanks again JC.:toast:

DDTUNG:cool:
Tweaked!
10-23-2002, 04:02 AM
Just realized after reading this thread, that I forgot to setup my old p///, I had done my p4 though. The p/// is 77% done w/ a p180, so after it finnishes that, I'll make the change:)
Dissolved
10-23-2002, 04:37 AM
damn it takes me abour 8mins 44sec to do one of these on a axp1.733ghz :'(
ExtremeAMD
10-26-2002, 11:37 AM
Hmm... big?
Dissolved
10-26-2002, 04:42 PM
Originally posted by ExtremeAMD
Hmm... big?


thats a gromac, there all like that. there not much bigger then folding proteins.